PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G27960.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1127aa    MW: 124545 Da    PI: 6.434
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G27960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.79.6e-23121222199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++
  OGLUM06G27960.1 121 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RD 210
                      99*****************************954.4444.49************************************************..56 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++++l+++++r+
  OGLUM06G27960.1 211 EKQQLLLGIRRA 222
                      88889****997 PP

2Auxin_resp1187.8e-39247330183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  OGLUM06G27960.1 247 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 330
                      79**********************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-43110250IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-41113236IPR015300DNA-binding pseudobarrel domain
CDDcd100174.48E-19120212No hitNo description
SMARTSM010191.6E-22121223IPR003340B3 DNA binding domain
PfamPF023621.2E-20121222IPR003340B3 DNA binding domain
PROSITE profilePS5086311.801121223IPR003340B3 DNA binding domain
PfamPF065071.5E-33247330IPR010525Auxin response factor
PfamPF023091.7E-99911078IPR033389AUX/IAA domain
PROSITE profilePS5174526.9389931077IPR000270PB1 domain
SuperFamilySSF542774.41E-710051072No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1127 aa     Download sequence    Send to blast
MMKQAQQQPP PPPASSAATT TTAMAAAAAA AVVGSGCEGE KTKAPAINSE LWHACAGPLV  60
SLPPAGSLVV YFPQGHSEQA DPETDEVYAQ MTLQPVTSYG KEALQLSELA LKQARPQTEF  120
FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE LQARDLHDNV WTFRHIYRGQ  180
PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD EKQQLLLGIR RANRQPTNIS SSVLSSDSMH  240
IGILAAAAHA AANNSPFTIF YNPRASPTEF VIPFAKYQKA VYGNQISLGM RFRMMFETEE  300
LGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESAAGE RRNRVSIWEI EPVAAPFFIC  360
PPPFFGAKRP RQLDDESSEM ENLLKRAMPW LGEEICIKDP QTQNTIMPGL SLVQWMNMNM  420
QQSSSFANTA MQSEYLRSLS NPNMQNLGAA DLSRQLCLQN QLLQQNNIQF NTPKLSQQMQ  480
PVNELAKAGI PLNQLGVSTK PQEQIHDASN LQRQQPSMNH MLPLSQTQTS LGQAQVLVQN  540
QMQQQHASST QGQQPATSQP LLLPQQQQQQ QQQQQQQQQQ QQQKLLQQQQ QQLLLQQQQQ  600
LSKMPAQLSS LANQQFQLTD QQLQLQLLQK LQQQQQSLLS QPAVTLAQLP LIQEQQKLLL  660
DMQQQLSNSQ TLSQQQMMPQ QSTKVPSQNT PLPLPVQQEP QQKLLQKQAM LADTSEAAVP  720
PTTSVNVIST TGSPLMTTGA THSVLTEEIP SCSTSPSTAN GNHLLQPILG RNKHCSMINT  780
EKVPQSAAPM SVPSSLEAVT ATPRMIKDSP KLNHNVKQSV VASKLANAGT GSQNYVNNPP  840
PTDYLETASS ATSVWLSQND GLLHQNFPMS NFNQPQMFKD APPDAEIHAA NTSNNALFGI  900
NGDGPLGFPI GLGTDDFLSN GIDAAKYENH ISTEIDNSYR IPKDAQQEIS SSMVSQSFGA  960
SDMAFNSIDS TINDGGFLNR SSWPPAAPLK RMRTFTKVYK RGAVGRSIDM SQFSGYDELK  1020
HALARMFSIE GQLEERQRIG WKLVYKDHED DILLLGDDPW EEFVGCVKCI RILSPQEVQQ  1080
MSLEGCDLGN NIPPNQACSS SDGGNAWRAR CDQNSGNPSN GSYEQFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1494235146388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712960.0AB071296.1 Oryza sativa OsARF7a mRNA for auxin response factor 7a, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643493.10.0PREDICTED: auxin response factor 19
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLA0A0E0AE050.0A0A0E0AE05_9ORYZ; Auxin response factor
STRINGORGLA06G0221800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19